Make linux system use socks5 by default

I am using Ubuntu Gnome right now and I would like to ask if I do NOT use the GUI to change socks5 port, what other ways I can make my system went through socks5 and make it default?

The reason I am asking is that I use a shadowsocks proxy server to bypass the GFW. Right now I am stuck on a system that uses gnome as a DE because the app I am using only supports Gnome desktop environment.

If I can setup a shadowsocks server using the terminal and change my system proxy to socks5 using terminal I would be good to go.

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